We have been experiencing some issues that I think are related to the WAAS and need opinions and advice on how to resolve.
We are running the latest 4.1.1c code on all WAEs and are running in the new AO mode (not file services in legacy mode).
At our data center (where the servers are) we have a 9mbps circuit connecting it to the MPLS cloud. At some of our remote sites (where the users are) we have T1s and fractional T1s. Almost daily we are seeing cases where a single connection is consuming all of the bandwidth at the remote sites. This is typically only for a defined period of anywhere from 10 minutes to an hour and can be traced to particular activity like copying a large files, etc. Before the WAAS was implemented we wouldn't see cases where a single operation could consume literally 100% of the bandwidth and I wonder if the core WAAS (at the data center) could be over utilizing the bandwidth since the core has 9mbps available.
The problem is that when this occurs, it affects everyone else on the circuit since the circuit is slammed. Most of our users use terminal server connections and theses are greatly affected when all of the bandwidth is consumed. We have given the terminal server connections a higher priority inside the WAAS (through policy prioritization) and setting the DSCP marking to af21(18). We have even tried QOS on the routers but the condition occurs on a regular basis.