This has to be some kind of record. Your server has been up for over two years. It is quite possible that CTMJrmServer has quietly crashed, or ran out of memory. Try restating Daemon Manager, and see the problem goes away.
Your pdshow and CTMJrmServer.log only show dates from 2008. How are you gathering the pdshow output?
You're seeing CSCte49301.
The EssentialsDM daemon hangs in a Waiting to initialize state (as seen in the output of the pdshow command). Additionally, one might see "Error connecting to JRM" in Resource Manager Essentials applications.
This occurs on Windows servers after the patch for KB968930 is installed, and only if the Windows Remote Management service was started prior to starting CiscoWorks Daemon Manager.
Shutdown CiscoWorks Daemon Manager with the following command from the server's command prompt:
net stop crmdmgtd
Delete the following two files:
Restart CiscoWorks Daemon Manager with the following command:
net start crmdmgtd
If that does not work, then the Windows Remote Management service must be stopped, and disabled. Then, CiscoWorks Daemon Manager must be restarted.