Not sure that I understand your question.
Each VDC is independent. Therefore if you modify one VDC this config will not automatically be applied to the other VDC on a single switch. For example if you define a loopback interface on one VDC, this will not be replicated to any other VDCs.
There is not really the concept of primary and secondary VDCs. See below a white paper explaining the concepts.
http://www.cisco.com/c/en/us/products/collateral/switches/nexus-7000-10-slot-switch/White_Paper_Tech_Overview_Virtual_Device_Contexts.html
Whether or not traffic will be re-routed by the other VDC depends on your overall network design.